LBL ICBP50 integrative genomic data

13 Nov 2014 | Downloads | Contributor(s): Joe Gray, Jonathan Bistline

From Joe Gray, Lawrence Berkeley National Laboratory.  There are seventeen (17) files in this study: Affymetrix U133A gene expression data (icbp_u133a.gct) Affymetrix U133A gene expression data (ICBP_U133a.zip) Affymetrix splice junction exon-exon data (ICBP_Junction.zip) Affymetrix...

Baylor Residual breast cancer

13 Nov 2014 | Downloads | Contributor(s): Creighton C, Lewis M, Chang J, Jonathan Bistline

Residual breast cancers after conventional therapy display mesenchymal as tumor-initiating features.  There are four (4) files included in this study: Sample Annotation (combined_sample_annotation.txt) Gene expression data from CD44+/CD24- cells sorted by flow cytometry (GSE7513.gct) Human...

CERR: A Computational Environment for Radiotherapy Research

28 Oct 2014 | External Applications | Contributor(s): Joseph Deasy

CERR (pronounced 'sir') is a software platform for developing and sharing research results in radiation therapy treatment planning.CERR is written in the widely-used Matlab language (version 7.0 or later), allowing for low-cost development of visualization and analysis tools.CERR will...

Quantitative Imaging Network(QIN) BIDS Related Tools

27 Oct 2014 | Downloads | Contributor(s): Andrey Fedorov, Thomas Casavant

An inventory of the software tools used by the QIN sites to facilitate collaborative efforts such as sharing of analysis results and software tools.

QIN Tools Inventory Summary

15 Oct 2014 | Teaching Materials | Contributor(s): Andrey Fedorov

QIN Tools survey has been conducted in two iterations starting from the Spring 2014 [1]. In the beginning of Summer 2014, a revised version of the survey has been released [2]. The results of the survey are available at [3], and also include the analysis of other data sources (such as “QIN...

Resources on NCIP Hub

22 Sep 2014 | Teaching Materials | Contributor(s): Lisa Mahoney

This is a presentation given as part of the NCIP Hub Webinar Series. It reviews at a high level what resources are, why and when to use them, and how to contribute.

Integrated analysis of breast cancer cell lines reveals unique signaling pathways

16 Sep 2014 | Publications | Contributor(s): Laura M Heiser, Nicholas J Wang, Carolyn L Talcott, Keith R Laderoute, Merrill Knapp, Yinghui Guan, Zhi Hu, Safiyyah Ziyad, Barbara L Weber, Sylvie Laquerre, Jeffrey R Jackson, Richard F Wooster, Wen Lin Kuo, Joe W Gray, Paul T Spellman

AbstractBackgroundCancer is a heterogeneous disease resulting from the accumulation of genetic defects that negatively impact control of cell division, motility, adhesion and apoptosis. Deregulation in signaling along the EgfR-MAPK pathway is common in breast cancer, though the manner in which...

"DICOM 301" - Enhanced Multi-frame and Quantitation:

04 Sep 2014 | Presentations | Contributor(s): David Clunie

 In-depth presentation on the Digital Imaging and Communications in Medicine StandardA one-hour  presentation of DICOM presented by Dr. David Clunie for the members of DICOM Working Group 30, Small Animal Imaging. 

pRainBow optical barcoding library

14 Aug 2014 | Reagents | Contributor(s): Andries Zijlstra

Note: this is a work in progress. About: pRainBow is a library of lentiviral vectors designed to allow for fluorescent labeling of cells with one of 7 distinct fluorescent proteins. Composition: How to obtain: How to cite: Other information:Good global...

Why Should You Care About Accessibility of Your Contributed Content?

02 Jun 2014 | Teaching Materials

Most people today can hardly conceive of life without the internet. Some have argued that no other single invention has been more revolutionary since Gutenberg's printing press in the 1400s. Now, at the click of a mouse, the world can be "at your fingertips"—that is, if you...

Collections on NCIP Hub

02 Jun 2014 | Teaching Materials | Contributor(s): Ishwar Chandramouliswaran, Lisa Mahoney

NCIP Hub Webinar Series presentation given on April 24, 2014. The presentation explains what collections are, and how and when to use them.

Data Acquisition Working Group

21 Apr 2014 | Presentations | Contributor(s): Tom Chenevert, Paul Kinahan

DA-WG Update on PET-CT and DWI MRI

Data Acquisition Working Group

21 Apr 2014 | Presentations | Contributor(s): Tom Chenevert, Paul Kinahan

DA-WG Update on PET-CT and DWI MRI

Image Analysis and Performance Metrics WG - PET/CT Update

21 Apr 2014 | Presentations | Contributor(s): Jayashree Kalpathy-Cramer, Vyshak Chandra

IAPM-WG PET/CT Update

Image Analysis and Performance Metrics WG - DW and DCE MRI Update

21 Apr 2014 | Presentations | Contributor(s): Wei Huang, Tom Chenevert, Vyshak Chandra

IAPM-WG - DW and DCE MRI Update

Hub Zero Status Update

21 Apr 2014 | Presentations | Contributor(s): Jayashree Kalpathy-Cramer, Vyshak Chandra

NCIP Hub, an environment to facilitate collaboration within the Quantitative Imaging Network

Clinical Trials Design, Development, and Outreach Working Group

21 Apr 2014 | Presentations | Contributor(s): Richard Wahl, John Buatti, Vyshak Chandra

Clinical Trials Design, Development, and Outreach Working Group Update

Bioinformatics/IT and Data Sharing Working Group Update

21 Apr 2014 | Presentations | Contributor(s): Brad Erickson, Tom Casavant, John Freymann, Vyshak Chandra

Bioinformatics/IT and Data Sharing Working Group Update

QIBA Status

21 Apr 2014 | Presentations | Contributor(s): Daniel Sullivan, Vyshak Chandra

Status and potential for further collaboration with RSNA QIBA