Draft Agenda for Annual Meeting:
Day One
8:00 Registration & Breakfast
8:30 U24 Genomic Projects Perspective: Brief presentations and Panel Discussion. Discussion topics to include engagement with users; considerations for transitioning to early prototype to broadly used software; obstacles to success; sustainability considerations
- Trinity: Transcriptome assembly for genetic and functional analysis of cancer
- Cancer Genomics:Integrative and Scalable Solutions in R / Bioconductor
- NDEx – the Network Data Exchange A Network Commons for Biologists
- Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Xena
10:00 Break
10:15 Keynote – Stephen Friend
11:00 TBD
12:00 Lunch
1:00 U24 Clinical Research Projects Perspective – Brief presentations and panel discussion. Discussion topics to include engagement with users; considerations for transitioning to early prototype to broadly used software; obstacles to success
- Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research
- Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery
- Cancer Deep Phenotype Extraction from Electronic Medical Records
- Quantitative Image Informatics for Cancer Research (QIICR)
- Tools to Analyze Morphology and Spatially Mapped Molecular Data
2:30 Break
2:45 Flash Talks: New projects promoting posters
- Computational Framework for Single-Cell Genomics of Tumors
- Informatics Links between Histological Features and Genetics in Cancer
- Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer
- GenePattern Notebooks for Cancer Research
- Informatics Quantitative Radiomics System Decoding the Tumor Phenotype
3:15 Poster Sessions and Demos
- Posters by new projects; U01 and U24 invited but not “required”. Poster dimensions are 48” (w) x 36” (h)
- 10 Demos by U01 and U24 projects (excluding new awardees), two running simultaneously, 20 min each + 5 min transition
| Track 1 Demos | Track 2 Demos | |
|---|---|---|
| 3:15 | Trinity – Transcriptome assembly for genetic and functional analysis of cancer | Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research |
| 3:40 | Cancer Genomics:Integrative and Scalable Solutions in R / Bioconductor | Informatics Tools for Optimized Imaging Biomarkers for Cancer Research&Discovery |
| 4:05 | NDEx – the Network Data Exchange A Network Commons for Biologists | Cancer Deep Phenotype Extraction from Electronic Medical Records |
| 4:30 | Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Cancer Genomics Browser | Quantitative Image Informatics for Cancer Research (QIICR) |
| 4:55 | Software Tools For Regulatory Analysis of Large Cancer Methylome Datasets | Informatics to Enable Routine Personalized Cancer Therapy |
5:30 Industry Panel: Discussion topics to include considerations for using open source software; collaborations with academic groups; overall informatics needs
6:15 Dinner
Day Two
8:30 Panel Discussion: U01/R01 Projects: Brief presentations and panel discussion. Sign up here. Discussion topics to include:
- Challenges in early stage development
- Recruiting users and community at the early stages of a project
10:00 Break
10:30 Poster Sessions and Demos
- Posters by new projects; U01 and U24 invited but not “required”
- 12 Demos by U01 and U24 projects (excluding new awardees), two running simultaneously, 20 min each + 5 min transition
| Track 1 Demos | Track 2 Demos | |
|---|---|---|
| 10:30 | Interactive Informatics Resource for Research-driven Cancer Proteomics | EMR Adverse Drug Event Detection for Pharmacovigilance |
| 10:55 | Informatics Tools for High-throughput Analysis of Cancer Mutations | Tools to Analyze Morphology and Spatially Mapped Molecular Data |
| 11:20 | OmniSearch – A semantic search tool for discovering microRNAs critical roles in human cancer | caCDE-QA – A Quality Assurance Platform for Cancer Study Common Data Elements |
| 11:45 | MeV – Software for Next Generation Genomic Data Analysis | GenePattern Notebooks for Cancer Research |
12:15 Lunch
1:30 Poster sessions and demos (continued)
| Track 1 Demos | Track 2 Demos | |
|---|---|---|
| 1:30 | ESCE – DISCOVERING MOLECULAR PROCESSES | Developing Informatics Technologies to Model Cancer Gene Regulation |
| 1:55 | Interpreting massive genomic data sets via summarization | Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer. |
2:30 Presentations on funded collaborations and new proposals, 5 min each
- Huang/Jiang
- Karchin/Bernstam
- Karchin/Ideker
- Jiang/Jacobsen/Savova
- Bernstam/Jacobsen/Savova
- Saltz/Fedorov/Kalpathy-Cramer
- Haussler
- Quackenbush/Aerts/Huang/Gutman/Cooper
3:30 Activities of the Training and Outreach Working Group
4:00 Closing remarks and adjourn