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Containers and Workflows Interest Group

MONTHLY SEMINARS

June 12th 2020

Topic: The PhenoMeNal cloud-aware e-Infrastructure

Presenter: Dr.Pablo Moreno -EMBL-EBI UK, Dr.Steffen Neumann, Leibniz Institute of Plant Biochemistry, Halle, Germany and the PhenoMeNal consortium. 

Abstract

Slides

Recording

 

May 08th 2020

Topic: Containers on HPC – the view from Biowulf

Presenter: Dr.DavidGodlove, Computational Biologist, NIH HPC

Abstract

Slides

Recording

 

APRIL 10th 2020

Topic: Cancer Data Analytics on the ISB-CGC platform

Presenter: Dr.Kawther Abdilleh, Bioinformatics Scientist, GDIT, ISB-CGC  and Dr.Fabian Seidl, Bioinformatics Scientist, GDIT, ISB-CGC

Abstract

Slides

Recording

 

MARCH 13TH 2020

Topic: Deep-Learning based microscopy image analysis pipelines

Presenter: Dr. Conor Evans, Associate Professor, Wellman Center for Photomedicine, Massachusetts General Hospital, Harvard Medical School, Affiliate Faculty, Harvard University Biophysics Program 

Abstract

Slides

Recording

 

FEBRUARY 14TH 2020

Topic: ROBOKOP and the Biomedical Data Translator: Efficiently leveraging a distributed data ecosystem

Presenter: By Dr.Patrick Wang - CoVar Applied Technologies, Inc and Dr.Karamarie Fecho - Copperline Professional Solutions; Renaissance Computing Institute, UNC Chapel Hill

Abstract

Slides

Recording

 

JANUARY 10TH 2020

Cancelled

 

DECEMBER 13TH 2019

Topic: Containerized Attribute Indexing and Graph Genomes for Federated Data Access

Presenter: By Dr.Ben Busby, Scientific Lead NCBI Hackathon Program, OpenCravat.org, Data Science Advisor

Abstract

Slides

Recording

 

NOVEMBER 8TH 2019

Topic: Dockerising PathOS: A high volume reporting platform for NGS variants

Presenter: Dr.Ken Doig, Head Clinical Informatics Lab, Peter MacCallum Cancer Centre, Melbourne, Australia

Abstract

Slides

Recording

 

OCTOBER 11TH 2019

Topic: Reproducible data analysis with Snakemake

Presenter: Johannes Köster, Ph.D, Institute of Human Genetics, University Hospital Essen, University of Duisburg-Essen

Abstract

Slides

Recording

 

SEPTEMBER 13th 2019

Topic: Integrating multi-omic data on the cloud yields insights into retrotransposon activity in cancer

Presenter: Wilson McKerrow, NYU School of Medicine, Manisha Ray, SBG

Abstract

Slides

Recording

 

AUGUST 9th 2019

Topic: BioCompute Objects as a Framework for Uniting Advances in Workflow Portability and Reproducibility

Presenter: Dennis A. Dean, II, PhD, Seven Bridges

Abstract

Slides

 

JULY 12th 2019 - CANCELLED due to summer slow down

 

JUNE 14th 2019

Topic: BioCompute: A Standardized Method to Communicate Bioinformatic Workflow Information and Ease Organizational Burden

Presenter: Jonathan Keeney, MD, Executive Steering Committee for BioCompute, GWU

Abstract

Slides

 

MAY 10th 2019

Topic: A platform approach to containerization and workflow management in cloud architectures

Presenter: Stephen Vebber and team, Red Hat Inc.

Abstract

Recording

Created by Durga Addepalli Last Modified Mon June 22, 2020 3:13 pm by Durga Addepalli