MONTHLY SEMINARS
June 12th 2020
Topic: The PhenoMeNal cloud-aware e-Infrastructure
Presenter: Dr.Pablo Moreno -EMBL-EBI UK, Dr.Steffen Neumann, Leibniz Institute of Plant Biochemistry, Halle, Germany and the PhenoMeNal consortium.
May 08th 2020
Topic: Containers on HPC – the view from Biowulf
Presenter: Dr.DavidGodlove, Computational Biologist, NIH HPC
APRIL 10th 2020
Topic: Cancer Data Analytics on the ISB-CGC platform
Presenter: Dr.Kawther Abdilleh, Bioinformatics Scientist, GDIT, ISB-CGC and Dr.Fabian Seidl, Bioinformatics Scientist, GDIT, ISB-CGC
MARCH 13TH 2020
Topic: Deep-Learning based microscopy image analysis pipelines
Presenter: Dr. Conor Evans, Associate Professor, Wellman Center for Photomedicine, Massachusetts General Hospital, Harvard Medical School, Affiliate Faculty, Harvard University Biophysics Program
FEBRUARY 14TH 2020
Topic: ROBOKOP and the Biomedical Data Translator: Efficiently leveraging a distributed data ecosystem
Presenter: By Dr.Patrick Wang - CoVar Applied Technologies, Inc and Dr.Karamarie Fecho - Copperline Professional Solutions; Renaissance Computing Institute, UNC Chapel Hill
JANUARY 10TH 2020
Cancelled
DECEMBER 13TH 2019
Topic: Containerized Attribute Indexing and Graph Genomes for Federated Data Access
Presenter: By Dr.Ben Busby, Scientific Lead NCBI Hackathon Program, OpenCravat.org, Data Science Advisor
NOVEMBER 8TH 2019
Topic: Dockerising PathOS: A high volume reporting platform for NGS variants
Presenter: Dr.Ken Doig, Head Clinical Informatics Lab, Peter MacCallum Cancer Centre, Melbourne, Australia
OCTOBER 11TH 2019
Topic: Reproducible data analysis with Snakemake
Presenter: Johannes Köster, Ph.D, Institute of Human Genetics, University Hospital Essen, University of Duisburg-Essen
SEPTEMBER 13th 2019
Topic: Integrating multi-omic data on the cloud yields insights into retrotransposon activity in cancer
Presenter: Wilson McKerrow, NYU School of Medicine, Manisha Ray, SBG
AUGUST 9th 2019
Topic: BioCompute Objects as a Framework for Uniting Advances in Workflow Portability and Reproducibility
Presenter: Dennis A. Dean, II, PhD, Seven Bridges
JULY 12th 2019 - CANCELLED due to summer slow down
JUNE 14th 2019
Topic: BioCompute: A Standardized Method to Communicate Bioinformatic Workflow Information and Ease Organizational Burden
Presenter: Jonathan Keeney, MD, Executive Steering Committee for BioCompute, GWU
MAY 10th 2019
Topic: A platform approach to containerization and workflow management in cloud architectures
Presenter: Stephen Vebber and team, Red Hat Inc.