Session Chairs
Eric Stahlberg, Frederick National Laboratory for Cancer Research
Thomas J. Barr, Nationwide Children's Hospital
Patricia Kovatch, Icahn School of Medicine at Mount Sinai
Sunita Chandrasekaran, University of Delaware
9:00am–9:10am |
Introduction – Fourth Computational Approaches for Cancer Workshop (CAFCW18) |
9:10am–10:00am |
Morning Keynote – Computational Approaches in Clinical Applications Presenter Ketan Paranjape |
10:00am–10:30am |
Morning Break |
10:30am–11:00am |
Developing a Reproducible WDL-Based Workflow for RNASeq Data Using Modular, Software Engineering-Based Approaches Author/Presenters Scott Cukras Fredrik Pettersson Yonghong Zhang Ling Cen Jamie Teer Steven Eschrich |
11:00am–11:15am |
Safety, Reproducibility, Performance: Accelerating Cancer Drug Discovery with Cloud, ML, and HPC Technologies Author/Presenter Amanda J. Minnich |
11:15am–11:45am |
The Gen3 Approach to Portability and Repeatability for Cancer Genomics Projects Author/Presenters Zac Flamig Yajing Tang Robert L. Grossman |
11:45am–12:00pm |
Scalable Deep Ensemble Learning for Cancer Drug Discovery Author/Presenters Sam Ade Jacobs Tim Moon Brian C. Van Essen |
12:00pm–12:30pm |
Panel Discussion: Reproducibility and Accessibility–Challenges and Opportunities |
12:30pm–2:00pm |
Lunch Break |
2:00pm–3:00pm |
Afternoon Keynote – Genomic Profiling of Normal, Premalignant, and Heterogeneous Tissues in Cancer Patients Presenter Paul Scheet |
3:00pm–3:30pm |
Workshop Afternoon Break |
3:30pm–4:00pm |
HPC-Based Hyperparameter Search of MT-CNN for Information Extraction from Cancer Pathology Reports Author/Presenters Hong-Jun Yoon Mohammed Alawad Blair Christian Jacob Hinkle Arvind Ramanathan Georgia Tourassi |
4:00pm–4:15pm |
Toward a Computational Simulation of Circulating Tumor Cell Transport in Vascular Geometries Author/Presenters John Gounley Erik W. Draeger Amanda Randles |
4:15pm–4:45pm |
Hummingbird: Efficient Performance Prediction for Executing Genomics Applications in the Cloud Author/Presenters Utsab Ray Frank Mueller Amir Bahmani Vandhana Krishnan |
4:45pm–5:00pm |
Toward a Pre-Cancer Image Atlas through Crowdsourcing and Machine Learning Author/Presenters Ashish Mahabal David Liu Luca Cinquini Daniel Crichton Heather Kincaid Sean Kelly Kristen Anton Maureen Colbert Christopher Amos Matthew Schabath Christos Patriotis Sudhir Srivastava |
5:00pm–5:30pm |
Extending Frontiers for Computing in Cancer – Special Session |