What's New: Past Month

Knowledge Base feed

  1. How do I filter NCIPhub emails?

    There are several ways that you can filter emails from the Hub depending on where those emails are coming from.If you are wanting to filter emails from a specific group, such as emails from a group...

    https://ncihub.org/kb/registration/filteringhubemails

  2. Can I use SFTP to upload large files to a project?

    Find documentation on how to utilize the SFTP functionality here.

    https://ncihub.org/kb/projects/can-i-use-sftp-to-upload-large-files-to-a-project

  3. DIgital Object Identifier

    What is a DOI?A DOI is a serial code used to uniquely identify digital assets. The Digital Object Identifier (DOI®) System is used to identify digital resources when referencing them in...

    https://ncihub.org/kb/misc/DOIs

  4. How does federated login work?

    You can choose to log into the hub using credentials from another authorizing party. This could be a web service provided by a company like Google or Facebook, or it could be a service provided by...

    https://ncihub.org/kb/registration/federatedlogin

  5. How do I update a Database?

    Change the Database FileNavigate to https://yourhub.org/projects.  Click on the Project that contains the Database that needs updating.  Click on “Databases” underneath Assets...

    https://ncihub.org/kb/projects/databaseupdate

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Resources feed

  1. CAFCW 122 Fusion of Structure Based Deep Learning to Accelerate Molecular Docking Predictions

    09 Dec 2019 | Contributor(s):: Derek Jones

    Modeling interactions with biological targets is a necessary step to begin reasoning about the therapeutic potential of a novel molecule in the drug discovery process. Molecular docking aids drug discovery researchers by searching over potential binding ‘poses’ of a drug molecule,...

  2. CAFCW 104 Deep Kernel Learning for Information Extraction from Cancer Pathology Reports

    09 Dec 2019 | Contributor(s):: Devanshu Agrawal, Abhishek Dubey, Georgia Tourassi, Jacob Hinkle

    Cancer pathology reports comprise a rich source of data for surveilling cancer incidents and tracking cancer trends across the United States. Cancer registries manually extract key pieces of information from these reports including tumor site, histology, laterality, behavior, grade, and...

  3. CAFCW 105 Acceleration of Hyperparameter Optimization via Task Parallelism for Information Extraction from Cancer Pathology Reports

    09 Dec 2019 | Contributor(s):: John Gounley, Hong-Jun Yoon

    Recent advances in high-performance computing systems for artificial intelligence enable large-scale training of information extraction models from free-form natural language texts. The development of these models is essential to the cancer surveillance research and automation. In this study, we...

  4. CAFCW 120 Integrating High-Performance Simulations and Learning toward Improved Cancer Therapy

    09 Dec 2019 | Contributor(s):: Austin Clyde, Dave Wright, Shantenu Jha

    We develop a novel deep learning workflow to effectively combine expensive but accurate molecular dynamics (MD) based BFE calculations with fast machine learning models to predict the affinity of compounds. In this approach, candidates are sampled from a large billion-compound synthetically...

  5. CAFCW 113 Digital Twins for Predictive Cancer Care: an HPC-Enabled Community Initiative

    09 Dec 2019 | Contributor(s):: Emily Greenspan, Carolyn Lauzon, Amy Gryshuk, Jonathan Ozik, Nicholson Collier, Tanveer Syeda-Mahmood, Ilya Shmulevich, Tina Hernandez-Boussard, Paul Macklin

    Cancer is a complex multiscale dynamical systems problem with interactions between the tumor and host at the molecular, cellular, tissue, and organism levels. Moreover, treatment occurs within a larger dynamical system that couples clinical care teams, hospital systems, industry, and government...

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Wiki Pages feed

  1. Meetings 20200227

    Back to Meetings & Minutes page Tentative schedule overview: Nov. 4 meeting update – Meeting in DC hosted by MDIC slides and breakout deliverables posted here Nov. 11 meeting update...

    https://ncihub.org/groups/digitalpathologyalliance/wiki/Meetings20200227

  2. Meetings 20191108

    Back to Meetings & Minutes page Distribution list Automate: Alliance website can now collect contact info automatically via Google Forms, and the data is saved in Google Sheets Move to FDA box:...

    https://ncihub.org/groups/digitalpathologyalliance/wiki/Meetings20191108

  3. HTTupdate Draft

    Click to get back to HTT updates. Click to the update from 6 December 2019 meeting Update Draft PathPresenter Demo

    https://ncihub.org/groups/httleadership/wiki/HTTupdateDraft

  4. HTTupdate 20191209

    Subject of this announcement HTT Project Update MDDT Submission The Alliance for Digital Pathology HTT Project Update: As a reminder, HTT stands for high-throughput truthing, a project that was...

    https://ncihub.org/groups/eedapstudies/wiki/HTTupdate20191209

  5. Human Annotations Ca Microscrope

    Link to Human Annotations top node Instructions for annotating HTT slides with Ca Microscrope Enter an e-mail address that will be the creator’s id in ROIs. Click on ‘create’...

    https://ncihub.org/groups/httleadership/wiki/HumanAnnotationsCaMicroscrope

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Publications feed

  1. HINTS 5 Cycle 2 11.27 27 Nov 2019 | Datasets | Contributor(s): Kelly Blake, Rick P Moser

    this is for the hints 5 cycle 2 11/27

    https://ncihub.org/publications/113

  2. Hints 5 Cycle 2.1 27 Nov 2019 | Datasets | Contributor(s): Kelly Blake

    This is the Hints 5 Cycle 2

    https://ncihub.org/publications/111

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