Tags: rna-seq

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  1. Instructional YouTube AltAnalyze Videos

    13 Oct 2016 | Contributor(s):: Nathan Salomonis

    Interactive tutorial for processing raw bulk and single-cell RNA-Seq (FASTQ) data in AltAnalyze:https://www.youtube.com/watch?v=Jylu-V7FmpY Interactive tutorials for analyzing pre-processed bulk and single-cell RNA-Seq data in...

  2. Instructional YouTube AltAnalyze Videos

    13 Oct 2016 | Contributor(s):: Nathan Salomonis

    Using AltAnalyze to process bulk and single-cell RNA-Seq files with the Kallisto algorithm:https://www.youtube.com/watch?v=Jylu-V7FmpY Using AltAnalyze to process pre-computed bulk and single-cell gene expression...

  3. Trinity: RNA-Seq De novo Assembly Application

    30 Jun 2015 | | Contributor(s):: Grabherr MG, Brian Haas, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, Di Palma F, Birren BW, Nusbaum C, Lindblad-toh K, Friedman N, Regev A

     Quick Guide for the ImpatientTrinity assembles transcript sequences from Illumina RNA-Seq data.Download Trinity here.Build Trinity by typing make : ; in the base installation directory.Assemble RNA-Seq data like so:Trinity --seqType fq --left reads_1.fq --right reads_2.fq...

  4. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

    Collections | 13 Apr 2015 | Posted by Brian Haas

    https://ncihub.org/groups/itcr/collections/itcr-training-assets

  5. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

    05 Feb 2015 | | Contributor(s):: Brian Haas, Aviv Regev, Bill Barnett

    This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...