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  1. Nano WG: Nanoinformatics Roadmap 2020 Update

    03 Nov 2016 | Presentations

    Nano WG weekly meeting November 3, 2016.Update on the Nanoinformatics 2020 Roadmap Activities by Andrea Haas and Fred Klaessig. 

  2. Taiwan's nanoMark system and related activities

    26 Oct 2016 | Presentations

    Nano WG Weekly Meeting October 20, 2016 Presentation by Dr. Mike Yao, Deputy manager, Center for Measurement Standards, Industrial Technology Research Institute (ITRI), Taiwan While the US and EU were struggled with the definition of "nano", the Taiwanese government in 2004,...

  3. Providing National Cyberinfrastructure to Biologists, esp. Genomicists

    02 Sep 2016 | Presentations | Contributor(s): Denise Warzel, Ann Christine Catlin, Sumudinie fernando

    National Center for Genome Analysis Support (NCGAS) provides access to High Performance Computing resources for biologists. NCGAS also maintains a curated set of applications and Galaxy instances of their software, as well as provides bioinformatics expertise.

  4. US-EU Nanoinformatics Roadmap Update

    27 Jul 2016 | Presentations

    US-EU Nanoinformatics Roadmap Update for the Nano WG on July 28, 2016

  5. Experimental Information Extraction from Nanocrystal Device Development Research Papers

    24 Jun 2016 | Presentations

    Nano WG weekly meeting: Dr. Thaer M. Dieb, National Institute for Material Science, Graduate School of Frontier Sciences, University of Tokyo  Seminar on development of an annotated corpus for nanocrystal device research papers and automatic information extraction framework...

  6. Text Mining, Data Mining and Molecular Dynamics Simulations for in Silico Design of PAMAM Dendrimers

    17 Jun 2016 | Presentations

    Nano WG June 16, 2016 Text Mining, Data Mining and Molecular Dynamics Simulations for in Silico Design of PAMAM Dendrimers by Julio Facelli

  7. Nanoinformatics: research and education

    17 Jun 2016 | Presentations

    Nano WG June 2, 2016.  Text mining of nanotoxicity literature (Victor Maojo)  

  8. Hunting for Opportunities: Nano-Enabled Drug Delivery to Treat Cancers

    26 May 2016 | Presentations

     Within the scope of ongoing nano informatics by our Georgia Tech group, we have analyzed Nano-Enabled Drug Delivery (NEDD) research publication and patent activity.  Here, I report on work led by Jing Ma exploring A) which nano components are helping deliver which B) drugs, to treat...

  9. An Extensible and Scalable Knowledge System Architecture for Cancer Research

    06 May 2016 | Presentations | Contributor(s): Denise Warzel, Ann Christine Catlin, Sumudinie fernando

    ITCR May 2016 PI meeting presentation on development of an advanced knowledge system to capture, share and support reproducible analysis from the biomarker data results.  

  10. Data Management: The appproach in NANoREG and ProSafe

    21 Apr 2016 | Presentations

    NANoREG project is working on establishing a common European approach to the regulatory testing of Manufactured Nanomaterials and ProSafe has been designed to coordinate and support the aims of EU member and associated states in their EU and international efforts regarding risk assessment,...

  11. InChl and Nanoparticles

    21 Apr 2016 | Presentations

    The InChI Trust is a nonprofit charity which works to develop and promote the use of the IUPAC InChI open-source chemical structure representation algorithm. The InChI with its associated InChIKey was developed as a non-proprietary international standard to represent chemical structures and has...

  12. Nano WG: NCI's Alliance for Nanotechnology in Cancer Program: Phase III and Data Sharing Plans

    18 Feb 2016 | Presentations

    Launched in 2004, the National Cancer Institute (NCI) Alliance for Nanotechnology in Cancer (Alliance) advanced a number of promising nanotechnologies for the diagnosis, treatment and prevention of cancer in its first ten years. This progress led NCI to announce in September 2015 its continued...

  13. GenomeSpace Presentation

    08 Feb 2016 | Presentations | Contributor(s): Denise Warzel, Ann Christine Catlin, Sumudinie fernando

    GenomeSpace (http://www.genomespace.org) is a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes',...

  14. Nanomaterial-Biological Interactions Knowledgebase

    21 Jan 2016 | Presentations

    Nano WG January 14, 2016 The NBI Knowledgebase is intended to offer industry, academia, the general public, and regulatory agencies a mechanism to rationally inquire for unbiased interpretation of nanomaterial exposure effects in biological systems. The knowledgebase serves as a repository for...

  15. Data Collection from the Nanotoxicology Literature Using ISA-TAB-Nano

    21 Jan 2016 | Presentations

    Nano WG meeting January 21, 2016 This is an updated version of the talk originally delivered at the CompNanoTox2015 conference. [1] Marchese Robinson, R.; Richarz, A.N.; Cassano, A.; Cronin, M.T.D; Rallo, R. (2015): Data Collection from the Nanotoxicology Literature Using ISA-TAB-Nano. FigShare....

  16. Materials Science Data Management Initiatives at NIST

    17 Dec 2015 | Presentations

    Nano WG December 17, 2015   •NIST is a national and world resource for fundamental data •Access should be easy and open –With regard to IP and privacy issues •As our nation’s standards organization… –NIST should be a leader in national and...

  17. The Open Scholarship Initiative (OSI)

    17 Dec 2015 | Presentations

    Nano WG meeting November 19, 2015. : "What should the future of scholarly publishing look like? How about open access? Who should decide? Can journals become more affordable and accessible? Will journals continue to serve as the primary means of communicating research? Can institutional...

  18. Nanomaterial Registry Update

    22 Oct 2015 | Presentations

    Nano WG weekly meeting October 22,2015

  19. Trinity: RNA-Seq De novo Assembly Application

    30 Jun 2015 | External Applications | Contributor(s): Denise Warzel, Ann Christine Catlin, Sumudinie fernando

     Quick Guide for the ImpatientTrinity assembles transcript sequences from Illumina RNA-Seq data.Download Trinity here.Build Trinity by typing make : ; in the base installation directory.Assemble RNA-Seq data like so:Trinity --seqType fq --left reads_1.fq --right reads_2.fq...

  20. CRAVAT - Cancer-Related Analysis of Variants Toolkit

    23 Jun 2015 | External Applications | Contributor(s): Denise Warzel, Ann Christine Catlin, Sumudinie fernando

    cravat is a bioinformatics pipeline : ; that performs high-throughput cancer-related analysis of variants. it : ; utilizes three applications: CHASM (Cancer-Specific Analysis of Somatic Mutations), VEST and SVN-Get. More information on these tools is available at CHASM Software.Release...