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  1. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

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    05 Feb 2015 | Contributor(s): Brian Haas, Aviv Regev, Bill Barnett

    This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...

  2. Multiclass cancer diagnosis using tumor gene expression signatures

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    10 Nov 2014

    Experiment Description:    The optimal treatment of patients with cancer depends on establishing accurate diagnoses by using a complex combination of clinical and histopathological data. In some instances, this task is difficult or impossible because of atypical clinical...

  3. Summarization of Big Data

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    07 Nov 2014 | Contributor(s): Jeffrey A. Blimes

    All about assay selection...

  4. Informatics to enable Routine Personalized Cancer Therapy (IPCT)

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    18 Feb 2014 | Contributor(s): Elmer V. Bernstam, Funda Meric-Bernstam

  5. Advanced Development of TIES - A Clinical Text Search Engine

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    18 Feb 2014 | Contributor(s): Rebecca Crowley

    Archived human tissues are an essential resource for translational research. Formalin-fixed, paraffin-embedded (FFPE) tissues from cancer patients are used in a wide range of assays, including RT-PCR, SNP profiling, multiplex biomarkers, imaging biomarkers, targeted exome, whole exome, and whole...

  6. Informatics Tools for High-throughput Analysis of Cancer Mutations

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    15 Jan 2014 | Contributor(s): Michael C Ryan, Rachel Karchin

  7. QIN HUBzero update

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    28 Oct 2013 | Contributor(s): Jayashree Kalpathy-Cramer

    presentation for the QIN EC meeting 10/21/2013

  8. HUBzero: A Web-based Platform for research, Education and Scientific Collaboration

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    11 Sep 2013 | Presentations | Contributor(s): Michael McLennan

    Imagine an app store for scientists, engineers, and educators filled with simulation and modeling tools — not simple Java applets, but real research codes that tackle difficult problems and may require substantial computing power drawn from the Cloud. Imagine a new way of publishing...

  9. Overview on HUBzero - Building Scientific Communities Online

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    03 Sep 2013 | Teaching Materials | Contributor(s): Michael McLennan

    This is a white paper/publication on the HUB and how one can build online communities using the HUBzero platform. See the tab on supporting documents for a video presentation.