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  1. NCIP Hub QIN Workshop - March 3, 2015

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    19 Mar 2015 | Presentations | Contributor(s): Michael McLennan

    Mike McLennan, director of HUBzero, presented an overview of basic NCIP Hub functionality to the QIN group on March 3, 2015. The presentation included an overview of the "hub" and HUBzero, and touched upon functionality such as projects, groups, resources and information sharing. The...

  2. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

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    05 Feb 2015 | Teaching Materials | Contributor(s): Brian Haas, Aviv Regev, Bill Barnett

    This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...

  3. Databases on NCIP Hub

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    21 Nov 2014 | Teaching Materials | Contributor(s): Patrick Mulligan

    Overview and demo of the database functionality on NCIP Hub. Further documentation on database functionality is included in the "Supporting Documentation" section.

  4. Building Online Scientific Communities via NCIP Hub

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    17 Nov 2014 | Teaching Materials | Contributor(s): Ishwar Chandramouliswaran

    Overview of how NCIP Hub can be used to build online scientific communities.

  5. Multiclass cancer diagnosis using tumor gene expression signatures

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    10 Nov 2014 | Downloads

    Experiment Description:    The optimal treatment of patients with cancer depends on establishing accurate diagnoses by using a complex combination of clinical and histopathological data. In some instances, this task is difficult or impossible because of atypical clinical...

  6. Resources on NCIP Hub

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    22 Sep 2014 | Teaching Materials | Contributor(s): Lisa Mahoney

    This is a presentation given as part of the NCIP Hub Webinar Series. It reviews at a high level what resources are, why and when to use them, and how to contribute.

  7. Why Should You Care About Accessibility of Your Contributed Content?

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    02 Jun 2014 | Teaching Materials

    Most people today can hardly conceive of life without the internet. Some have argued that no other single invention has been more revolutionary since Gutenberg's printing press in the 1400s. Now, at the click of a mouse, the world can be "at your fingertips"—that is, if you...

  8. Collections on NCIP Hub

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    02 Jun 2014 | Teaching Materials | Contributor(s): Ishwar Chandramouliswaran, Lisa Mahoney

    NCIP Hub Webinar Series presentation given on April 24, 2014. The presentation explains what collections are, and how and when to use them.

  9. NCIP Hub Dashboard Tutorial

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    15 Apr 2014 | Teaching Materials | Contributor(s): Lisa Mahoney

    This is a short "how-to" video to familiarize users with the customizable dashboard on NCIP Hub.

  10. Informatics to enable Routine Personalized Cancer Therapy (IPCT)

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    18 Feb 2014 | Presentations | Contributor(s): Elmer V. Bernstam, Funda Meric-Bernstam

  11. Advanced Development of TIES - A Clinical Text Search Engine

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    18 Feb 2014 | Presentations | Contributor(s): Rebecca Crowley

    Archived human tissues are an essential resource for translational research. Formalin-fixed, paraffin-embedded (FFPE) tissues from cancer patients are used in a wide range of assays, including RT-PCR, SNP profiling, multiplex biomarkers, imaging biomarkers, targeted exome, whole exome, and whole...

  12. Informatics Tools for High-throughput Analysis of Cancer Mutations

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    15 Jan 2014 | Presentations | Contributor(s): Michael C Ryan, Rachel Karchin

  13. caNanoLab: data sharing to expedite the use of nanotechnology in biomedicine

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    13 Dec 2013 | Publications | Contributor(s): Sharon Gaheen, George W Hinkal, Stephanie A Morris, Michal Lijowski, Mervi Heiskanen, Juli Klemm

    The use of nanotechnology in biomedicine involves the engineering of nanomaterials to act as therapeutic carriers, targeting agents and diagnostic imaging devices. The application of nanotechnology in cancer aims to transform early detection, targeted therapeutics and cancer prevention and...