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  1. CEINT's NanoPHEAT Project : Integrating Exposure and Toxicity Data to Build Risk Forecasting Tools

    16 Apr 2020

    The NanoPHEAT tool (Nano Product Hazard and Exposure Assessment Tool) is built to compile dose-response curves from literature, including hundreds of papers, and calculates the estimated exposure to nanoparticles as released from real products, based on some in-house experimental values that we...

  2. Jaqpot - An open-source web platform for creating, using, testing and sharing predictive models in nano-informatics

    20 Jun 2019

    Nano WG June 20, 2019Computational models that predict physicochemical properties, biokinetics or adverse biological effects of Engineered Nanomaterials (ENMs) are becoming increasingly important to support risk assessment and safety-by-design. This is primarily due to cost-saving and...

  3. Transitioning to Predictive Analysis for Nanoparticle Biocorona Studies

    14 May 2019

    Nano WG April 18, 2019: Proteins adsorbed to nanomaterials in a biological environment mediate cellular recognition, uptake, and toxicity of nanomaterials. Here, Dr. Korin Wheeler presents the development of experimental methods to characterize this population of proteins (also...

  4. The history of chemical information and the materials of the future

    25 Apr 2019

    Techniques, technologies, cultures, and infrastructures of information management played a central role in the development of the modern chemical sciences and the global chemicals industry since the late 19th century. Chemical databases and analytical techniques that privileged abstract,...

  5. FAIR for NanoSafety: where do we stand?

    05 Apr 2019

    Nano WG April 4, 2019 Findable, Accessible, Interoperable, Reusable (FAIR) sharing of nanosafety data.

  6. Dataset Curation, Assessment of their Quality, and Prediction Model Developments for Safe and Sustainable Nanotechnology (S2NANO)

    29 Nov 2018 | Presentations

    Nano WG November 29, 2018: Tae Hyun Yoon, Prof./CEO/Ph.D., Yoon Idea Lab. Co. Ltd. & Hanyang University In this presentation, I will introduce our recent research outcomes from S2NANO: PredictNANO project, which aimed to bridge the nanosafety knowledge gaps between R&D...

  7. NanoInformatics Knowledge Commons Curation Team: Building the Data Dictionary to Enrich Data Curation

    11 Jul 2018 | Presentations

    Nano WG Presentation, May 31st, 2018 Organized storing of data using informed-decision making to determine what information should be curated, when data curation is complete, and how to identify high-quality data. Purpose of NIKC structure & curation process: tell the story of...

  8. Dissolution as a Paradigm in Regulating Nanomaterials

    16 Aug 2017 | Presentations

    Nano WG presentation, August 10, 2017 Themes: • Dissolution as a decision criterion • Analogies to ζ-potential & VSSA • Relation to nanoform & nanoscale form • Dissolution kinetics and artifacts • ASTM particle ontology & Nanoinformatics Roadmap...

  9. Workshop Tweets

    15 Aug 2017 | Publications | Contributor(s): Sumudinie fernando, Ann Christine Catlin

    Collated tweets from workshop and networking reception.

  10. caNanoLab Overview

    05 Jul 2017 | Presentations

    General Overview of the caNanoLab data portal: data submission workflow, collaboration features, data sharing and working with Journals and PubMed to share information about data submissions.

  11. NANOANALYTICS OF EXTRACELLULAR VESICLES – Standards for isolation, characterization and reporting

    26 May 2017 | Presentations | Contributor(s): Sumudinie fernando, Ann Christine Catlin

    Nano WG presentation on May 25, 2017. Presentation by Dr.  Shivani Sharma, Associate Director of the Nano Pico Characterization Lab, UCLA. Nanoscale characterization of exosomes and their use disease biomarkers and drug delivery agents

  12. European Chemical Agency's work to implement REACH regulation for nanomaterials

    04 May 2017 | Presentations

    Nano WG presentation on May 4, 2017.  REACH = Registration, Evaluation, Authorisation (& restriction) of Chemicals aims to ensure a high level of protection of human health and the environment while enhancing competitiveness and innovation. Nano materials are covered by...

  13. Human Disease Ontology

    21 Sep 2016 | External Applications | Contributor(s): Sumudinie fernando, Ann Christine Catlin

    The Disease Ontology has been developed as a standardized ontology for human disease, since 2003, with the purpose of providing the biomedical community with manual curated, consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related...

  14. Summary of the 2015 Epigenetic Engineering for Cancer Workshops

    22 Dec 2015 | Publications | Contributor(s): Sumudinie fernando, Ann Christine Catlin

    This document provides a general summary of the 2 virtual workshops held in Fall of 2015 to explore the suitability of epigenetic engineering tools to specifically modify epigenetic loci to study and/or treat cancer.

  15. UCSC Biomedical Evidence Graph Demonstration

    03 Jun 2015 | Presentations | Contributor(s): Mervi Heiskanen

    The BMEG demonstration includes the following elements: 1) Organization of crowd-source challenges to develop best-of-breed methods including an overview of current DREAM projects, living benchmarks; 2) Enabling cloud-ready methods for mass compute with examples of recently...

  16. Seven Bridges Cancer Genomics Cloud Pilot TCGA 2015 symposium workshop presentation

    23 May 2015 | Presentations | Contributor(s): Mervi Heiskanen

    Basic and translational cancer research creates the need to disseminate, manage, and interpret large heterogeneous datasets. The volume and complexity of the data now routinely generated by high-throughput technologies has become too costly for individual laboratories and many research...

  17. Introduction to the Trinity Cancer Transcriptome Analysis Toolkit

    05 Feb 2015 | Teaching Materials | Contributor(s): Sumudinie fernando, Ann Christine Catlin

    This short video provides an overview of our ITCR-funded effort to leverage RNA-Seq and de novo transcriptome assembly to assist researchers in studying cancer transcriptomes.  Visit our NCGAS Trinity/Galaxy portal to access these compute...

  18. Video: Learn how TIES can help manage research resources

    16 Jan 2015 | Presentations | Contributor(s): Mervi Heiskanen

    https://www.youtube.com/watch?v=EzjAo9LJ4tg  

  19. CRAVAT Introduction Video - Cancer Related Analysis of Variants

    03 Dec 2014 | Teaching Materials | Contributor(s): Mervi Heiskanen

    This video provides a brief overview of the CRAVAT web service(http://www.cravat.us/).  CRAVAT provides annotation and analysis of cancer mutations. CRAVAT is free, very easy to use, and can handle large volumes of mutations.[[Youtube(xovmIy11Bcs)]]Please switch to 1080 resolution and watch...

  20. Multiclass cancer diagnosis using tumor gene expression signatures

    10 Nov 2014 | Downloads | Contributor(s): Sumudinie fernando, Ann Christine Catlin

    Experiment Description:    The optimal treatment of patients with cancer depends on establishing accurate diagnoses by using a complex combination of clinical and histopathological data. In some instances, this task is difficult or impossible because of atypical clinical...