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NCIP Hub: Collaboration Tool for NCI Affiliated Programs and Investigators
16 Nov 2018 | Contributor(s): Mervi Heiskanen, Aparna Vinodh
NCIP Hub overview and CRCHD PACHE Hub demonstration.
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NDEx, The Network Data Exchange Crowdsourcing the hallmark networks of cancer
23 Jun 2014 | Presentations | Contributor(s): Trey Ideker
ITCR PI meeting presentation.
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Next-Generation Clustered Heat Maps (NG-CHM)
07 Oct 2015 | Presentations | Contributor(s): Weinstein John, Bradley Broom
Clustered Heat Maps (CHMs) have been referred to as the ubiquitous visual icons of post-genomic biology -- the most frequent type of visualization for large molecular profiling databases. However, “traditional” CHMs are static images -- a serious limitation. Accordingly, we have now...
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Notes from Policy Subgroup April 16, 2014
17 Apr 2014 | Downloads | Contributor(s): Rebecca Crowley
Notes from our brainstorming session where we came up with the types of policies we needed for the Network. Assignments for next meeting were also made.
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Notes from the ITCR Annual Meeting May 27-28, 2015
10 Jun 2015 | Downloads | Contributor(s): Ishwar Chandramouliswaran, Juli Klemm
Notes from the ITCR Annual Meeting May 27-28, 2015
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Novel Stereological Methods for Alveolar Cell Quantification in the Mouse Lung
10 Mar 2016 | Presentations | Contributor(s): Odemaris Narvaez del Pilar
Understanding whether lung development occurs by increase in cell size or cell number can lead to relevant clinical implications in phenomena such catch up growth, chronic neonatal lung disease and cancer. Although alveolar type 1 (AT1) and type 2 (AT2) cells have been quantified in the past,...
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Objective Selection of GBM Imaging Features for Clinical Trials
30 Apr 2014 | Teaching Materials | Contributor(s): Bradley Erickson, Daniel Blezek, Panos Korfiatis, Jian Su, Ross Mitchell
We focus on identifying MRI features that predict patient survival and response in both low grade and high grade brain tumors.
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October 2021 CWIG Webinar Slides - Arun Isaac
27 Dec 2021 | Downloads | Contributor(s): Alan Zheng
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October 2021 CWIG Webinar Slides - Pjotr Prins
27 Dec 2021 | Downloads | Contributor(s): Alan Zheng
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OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data
28 Apr 2014 | Publications | Contributor(s): Hu Y, Chunhua Yan, Hsu CH, Chen QR, Niu K, Komatsoulis GA, Meerzaman D.
OmicCircos is an R software package used to generate high-quality circular plots for visualizing genomic variations, including mutation patterns, copy number variations (CNVs), expression patterns, and methylation patterns. Such variations can be displayed as scatterplot, line, or text-label...
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Open source diffusion MRI technology for brain cancer research
07 Oct 2015 | Presentations | Contributor(s): Lauren O\'Donnell
Using measurements of water diffusion, dMRI can give unique insights into the microstructure and cellular orientation of tissues. There is a growing awareness in the neurosurgery community that diffusion models must move beyond the current clinical standard of the diffusion tensor for better...
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OSU ICBP45 integrative genomic data
13 Nov 2014 | Downloads | Contributor(s): Jonathan Bistline
There are forty one (41) datasets in this study: 1-40. MBDCap-seq data (100727_s_3_sorted.tdf to 100910_s_4_sorted.tdf) 41. Sample Annotation (osu_icbp45_sample_annotation.txt) These datasets have been exported from the Broad Institute's ICBP Data & Analysis Portal.
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OSU/IU ICBP50 integrative genomic data
13 Nov 2014 | Downloads | Contributor(s): Yunlong Liu, Jonathan Bistline
Multi-domain assays of genome-wide DNA methylation and histone modification patterns in MCF7 and OHT drug resistant cells. Data are produced at LBNL and the OSU, provided from Indiana University School of Medicine (Yunlong Liu). There are eighteen (18) datasets in this study:...
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Overview of the National Cancer Institute (NCI) Nanotechnology Characterizaton Laboratory (NCL)
03 Nov 2014 | Presentations | Contributor(s): Jennifer Hall Grossman
Working in concert with the National Institute of Standards and Technology (NIST) and the U.S. Food and Drug Administration (FDA), the National Cancer Institute (NCI) established the Nanotechnology Characterization Laboratory to perform preclinical efficacy and toxicity testing of...
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Overview of the NCI Cancer Research Data Commons, Genomic Data Commons (GDC), and NCI Cloud Resources
07 Jun 2018 | Presentations | Contributor(s): Tanja Davidsen, Mervi Heiskanen
Nano WG presentation, June 7, 2018 by Tanja Davidsen, NCI CBIIT The Cancer Research Data Commons (CRDC) and NCI Cloud Resources overview.
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Overview on HUBzero - Building Scientific Communities Online
03 Sep 2013 | Teaching Materials | Contributor(s): Michael McLennan
This is a white paper/publication on the HUB and how one can build online communities using the HUBzero platform. See the tab on supporting documents for a video presentation.
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Overview: The HUBzero Platform for Scientific Collaboration
18 Dec 2013 | Presentations | Contributor(s): Michael McLennan
This web site was created using a collaborative infrastructure called HUBzero, developed by Purdue University. HUBzero is the basis of nanoHUB.org and more than 50 other sites covering a wide range of scientific disciplines, including bio-fuels, microelectromechanical systems, cancer research,...
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Packed Spheres Texture Reference Object
30 Dec 2015 | Downloads | Contributor(s): Larry Pierce
The Packed Sphere object represents hexagonally-packed spheres with 8 mm diameter and of uniform density. The image volume consists of 122x122x34 cubic voxels, 0.5 mm on edge.
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Pathology Image Informatics Platform for visualization, analysis and management
07 Oct 2015 | Presentations | Contributor(s): Metin Gurcan, Anant Madabhushi, Anne Martel
This multi-institutional proposal seeks to expand on an existing, freely available pathology image viewer (Sedeen Image Viewer) to create a pathology informatics platform (PIIP) for managing, annotating, sharing, and quantitatively analyzing digital Pathology Imaging (DPI) data. Sedeen has become...
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Patient Stories
30 Nov 2015 | Teaching Materials | Contributor(s): Diane Townsel
Beaumont’s Patient videos: is the story of five patients that have participated in clinical research or have been a part of a bio-specimen study. The videos tell the unique stories of our patients and how our Cancer Clinical Trials staff build relationships with our patients and guide them...