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  1. QIN Software tools inventory summary

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    20 Jan 2015 | Downloads | Contributor(s): Andrey Fedorov

    Abstract QIN Tools survey has been conducted in two iterations starting from the Spring 2014 [1]. In the beginning of Summer 2014, a revised version of the survey has been released [2]. The results of the survey are available at [3], and also include the analysis of other data sources (such as...

  2. QIN Tools Inventory Summary

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    15 Oct 2014 | Teaching Materials | Contributor(s): Andrey Fedorov

    QIN Tools survey has been conducted in two iterations starting from the Spring 2014 [1]. In the beginning of Summer 2014, a revised version of the survey has been released [2]. The results of the survey are available at [3], and also include the analysis of other data sources (such as “QIN...

  3. Quantitative Image Informatics for Cancer Research (QIICR)

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    04 Apr 2014 | Presentations | Contributor(s): Andrey Fedorov, Ron Kikinis

  4. Quantitative Image Informatics for Cancer Research (QIICR)

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    04 Apr 2014 | Presentations | Contributor(s): Andrey Fedorov, Ron Kikinis

  5. Quantitative Imaging Network (QIN) in China

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    18 Apr 2014 | Presentations | Contributor(s): Yan Kang

    A presentation on challenges & opportunities for QIN in China

  6. Quantitative Imaging Network(QIN) BIDS Related Tools

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    27 Oct 2014 | Downloads | Contributor(s): Andrey Fedorov, Thomas Casavant

    An inventory of the software tools used by the QIN sites to facilitate collaborative efforts such as sharing of analysis results and software tools.

  7. Slicer Update

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    21 Apr 2014 | Presentations | Contributor(s): Andrey Fedorov, Ron Kikinis

    Status of the Slicer Informatics (U24): Potential for WG Interactions

  8. Summarization of Big Data

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    07 Nov 2014 | Presentations | Contributor(s): Jeffrey A. Blimes

    All about assay selection...

  9. TATA Memorial Center

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    18 Apr 2014 | Presentations | Contributor(s): Meenakshi Thakur

  10. The Cistrome Data Collection

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    22 Jan 2014 | Presentations

  11. The Digital Slide Archive

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    13 Jun 2017 | Presentations | Contributor(s): David A Gutman, Lee Cooper

    Presentation at the 2017 Informatics Technology for Cancer Research Annual Meeting Advanced development of an open-source platform for web-based integrative digital image analysis in cancer.

  12. The Quantitative Imaging Network Meeting Introduction

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    18 Apr 2014 | Presentations | Contributor(s): Robert J.Nordstrom, Larry Clark, Pushpa Tandon, Yantian Zhang, Huiming Zhang, Lori Henderson, Lalitha Shankar, Keyvan Farahani, George redmond, James Deye, Jacek Capala, John Freyman, Justin Kirby

    Introductory remarks from the meeting sponsors.

  13. The World of HUBzero

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    11 Feb 2015 | Presentations | Contributor(s): Michael McLennan

    This part of a demo/presentation from the Force2015 conference giving you a 9 1/2 minute overview of the HUBzero platform and its capabilities - NCIP Hub is based on the HUBzero platform.[[Youtube(p_hpwoiXvEE,300,200)]]

  14. Tools for Creation of Integrated Data Repository for Cancer Research

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    16 Jun 2015 | Presentations | Contributor(s): Guoqian Jiang

    Admin Supplement Proposal Parent Projects: DeepPhe (PIs: Savova and Jacobson) caCDE-QA (PI: Jiang)

  15. Tools to Analyze Morphology and Spatially Mapped Molecular Data

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    03 Oct 2014 | Presentations | Contributor(s): Joel Saltz

  16. Translational Cancer Imaging

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    18 Apr 2014 | Presentations | Contributor(s): Tony Ng, David Hawkes, Shonit Punwani

  17. Trinity: RNA-Seq De novo Assembly Application

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    30 Jun 2015 | External Applications | Contributor(s): Grabherr MG, Brian Haas, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, Di Palma F, Birren BW, Nusbaum C, Lindblad-toh K, Friedman N, Regev A

     Quick Guide for the ImpatientTrinity assembles transcript sequences from Illumina RNA-Seq data.Download Trinity here.Build Trinity by typing make : ; in the base installation directory.Assemble RNA-Seq data like so:Trinity --seqType fq --left reads_1.fq --right reads_2.fq...