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  1. Instructional YouTube AltAnalyze Videos

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    13 Oct 2016 | Contributor(s): Nathan Salomonis

    Using AltAnalyze to process bulk and single-cell RNA-Seq files with the Kallisto algorithm:https://www.youtube.com/watch?v=Jylu-V7FmpY Using AltAnalyze to process pre-computed bulk and single-cell gene expression...

  2. Active Learning: A Toolkit for Teachers

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    11 Oct 2016 | Teaching Materials | Contributor(s): Jenna Schiffelbein

    This toolkit is intended to help K-12 teachers incorporate physical activity into their classrooms to promote healthy exercise behaviors with youth. It was developed in partnership between the Dartmouth-Hitchcock Norris Cotton Cancer Center, the State of Vermont, and the State of New Hampshire,...

  3. Human Disease Ontology

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    21 Sep 2016 | External Applications | Contributor(s): Lynn Schriml

    The Disease Ontology has been developed as a standardized ontology for human disease, since 2003, with the purpose of providing the biomedical community with manual curated, consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related...

  4. Health Rocks Compliment for Upper Elementary and Middle School

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    21 Sep 2016 | Teaching Materials | Contributor(s): John Patrick Brice Jr

    Written Compilation for Students in Rural Appalachian NC Middle and Elementary Schools regarding health and the environment with cancer topics integrated into curriculum *including substance abuse, nutrition, obesity, diabetes, and water safety education*

  5. NCIP Hub Account Creation Guide

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    20 Sep 2016 | Presentations | Contributor(s): Joanthan Kurian

    This presentation walks you through the NCIP Hub account creation process step by step.

  6. Providing National Cyberinfrastructure to Biologists, esp. Genomicists

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    02 Sep 2016 | Presentations | Contributor(s): Tom Doek, Mervi Heiskanen

    National Center for Genome Analysis Support (NCGAS) provides access to High Performance Computing resources for biologists. NCGAS also maintains a curated set of applications and Galaxy instances of their software, as well as provides bioinformatics expertise.

  7. caNanoLab Data Curation Tips

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    23 Aug 2016 | Presentations | Contributor(s): Sharon Gaheen

    This presentation includes tips for investigators submitting data to caNanoLab. 

  8. US-EU Nanoinformatics Roadmap Update

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    27 Jul 2016 | Presentations | Contributor(s): Frederick C. Klaessig

    US-EU Nanoinformatics Roadmap Update for the Nano WG on July 28, 2016

  9. Cancer Genomics, Open Science and PMI: FAIR at NCI

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    21 Jul 2016 | Presentations | Contributor(s): Warren Kibbe

    Presentation to the NLM Informatics Fellows on July 8th, 2016 highlighting cancer community activities in data science, open science, data sharing, and cancer genomics. 

  10. NCI Consortia and Networks

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    28 Jun 2016 | Downloads | Contributor(s): Tony Dickherber

    The attached spreadsheet contains a listing of all NCI-sponsored consortia and networks that might be leveraged or otherwise help drive prioritization of collaboration opportunities between IMAT and ITCR-supported investigators.

  11. Complete Active IMAT Project listing

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    28 Jun 2016 | Downloads | Contributor(s): Tony Dickherber, Mervi Heiskanen

    This spreadsheet contains a comprehensive list of all active projects supported by the NCI IMAT program, including grant type, project number, PI name, project start and end dates, project title and short description of the project.

  12. Experimental Information Extraction from Nanocrystal Device Development Research Papers

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    24 Jun 2016 | Presentations | Contributor(s): Thaer Dieb

    Nano WG weekly meeting: Dr. Thaer M. Dieb, National Institute for Material Science, Graduate School of Frontier Sciences, University of Tokyo  Seminar on development of an annotated corpus for nanocrystal device research papers and automatic information extraction framework...

  13. Text Mining, Data Mining and Molecular Dynamics Simulations for in Silico Design of PAMAM Dendrimers

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    17 Jun 2016 | Presentations | Contributor(s): Julio Facelli

    Nano WG June 16, 2016 Text Mining, Data Mining and Molecular Dynamics Simulations for in Silico Design of PAMAM Dendrimers by Julio Facelli

  14. Nanoinformatics: research and education

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    17 Jun 2016 | Presentations | Contributor(s): Victor Maojo

    Nano WG June 2, 2016.  Text mining of nanotoxicity literature (Victor Maojo)  

  15. IFNγ has variable effects on expression of MHC Class I and ICAM-1 in pediatric cancers which alter sensitivity to NK cell mediated lysis

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    01 Jun 2016 | Downloads | Contributor(s): Arianexys Aquino-Lopez, Vladimir Senyukov, Gabrielle Romain, Navin Varadarajan, Dean A. Lee

    Interferon-γ (IFNγ), a cytokine secreted by effector lymphocytes upon activation, is known to cause upregulation of MHC class I in tumor cells, which has been associated with natural killer (NK) cell inhibition. NK cells are very heterogeneous with respect to receptor expression and...

  16. Hunting for Opportunities: Nano-Enabled Drug Delivery to Treat Cancers

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    26 May 2016 | Presentations | Contributor(s): Alan Porter, Mervi Heiskanen

     Within the scope of ongoing nano informatics by our Georgia Tech group, we have analyzed Nano-Enabled Drug Delivery (NEDD) research publication and patent activity.  Here, I report on work led by Jing Ma exploring A) which nano components are helping deliver which B) drugs, to treat...

  17. An Extensible and Scalable Knowledge System Architecture for Cancer Research

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    06 May 2016 | Presentations | Contributor(s): Daniel Crichton

    ITCR May 2016 PI meeting presentation on development of an advanced knowledge system to capture, share and support reproducible analysis from the biomarker data results.  

  18. Integrative Cancer Biology Program Datasets

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    26 Apr 2016 | Series | Contributor(s): Jonathan Bistline, Michael Reich

    The NCI-ICBP promotes an integrative/systems approach to the study of cancer biology. The Program encourages scientists to study cancer as a complex biological system. Information gained from these studies are used to build reliable and testable predictive computation models of cancer processes...

  19. Data Management: The appproach in NANoREG and ProSafe

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    21 Apr 2016 | Presentations | Contributor(s): Sara Totaro, Hugues Crutzen

    NANoREG project is working on establishing a common European approach to the regulatory testing of Manufactured Nanomaterials and ProSafe has been designed to coordinate and support the aims of EU member and associated states in their EU and international efforts regarding risk assessment,...

  20. InChl and Nanoparticles

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    21 Apr 2016 | Presentations | Contributor(s): Steve Heller

    The InChI Trust is a nonprofit charity which works to develop and promote the use of the IUPAC InChI open-source chemical structure representation algorithm. The InChI with its associated InChIKey was developed as a non-proprietary international standard to represent chemical structures and has...