NANoREG-Proposed ISA-TAB-Nano Template Expansion

13 Apr 2017 | Presentations | Contributor(s): Nancy Birkner

Nano WG presentation April 13, 2017 by Dr. Nancy Birkner, post-doctoral associate at Duke University working in conjunction with the NanoInformatics Knowledge Commons, presented her progress on reviewing and updating the ISA-TAB-Nano data exchange formats. Dr. Birkner described the evolution of...

Nano, - A Nature Research Solution

27 Feb 2017 | Presentations | Contributor(s): Prathik Roy

Nano.nature.com known as Nano is a non-journal type product under the Nature Research portfolio. It aims to provide highly indexed and structured information related to nanomaterials derived from peer-reviewed journals. These include composition, synthesis, properties, characterization methods...

Activities to Promote Technology Research Collaborations (APTRC) PA-17-143 Pre-Application Webinar

24 Feb 2017 | Presentations | Contributor(s): Juli Klemm, Tony Dickherber

Pre-application seminar held February 24, 2017 for FOA PA-17-143 

CBioPortal

15 Feb 2017 | External Applications | Contributor(s): Schultz

This is a link to CBioPortal

Community Adoption & Adaptation of ISA-TAB-nano Data Sharing Templates: A brief overview, next steps at CEINT, and an open discussion of priority actions

09 Feb 2017 | Presentations | Contributor(s): Christine Ogilvie Hendren, Nancy Birkner

Nano WG meeting on February 2nd, 2017 ISA-TAB-Nano Next Steps 

ISA-TAB-Nano Update for the Nano WG

09 Feb 2017 | Presentations | Contributor(s): Mervi Heiskanen

Nano WG meeting on February 2nd, 2017 ISA-TAB-Nano Next Steps by the Duke team

Life after MOOCS: Online Science Education Needs a New Revolution

03 Feb 2017 | Presentations | Contributor(s): Phillip Compeau

ITCR Monthly PI Meeting, February 3, 2017 Presentation by Phillip Compeau (Carnegie Mellon U.)

Extending 3D Slicer to support ground truth pathology tissue segmentation data for integrated pathology/radiology image analysis competitions.

06 Jan 2017 | Presentations | Contributor(s): Joel Haskin Saltz, Andrey Fedorov, Jayashree Kalpathy-Cramer

ITCR PI Monthly Meeting January 6, 2017 Collaborative project goal: Improve support in 3D Slicer for pathology imaging, generate high quality, well curated “ground truth” annotations, integrate key aspects of the Stony Brook ITCR project (FeatureDB) into the MGH project and...

eNanoMapper Ontology

14 Dec 2016 | Presentations | Contributor(s): Linda Rieswijk

Nano WG December 7, 2016 presentation by Linda Rieswijk (Maastricht University).Additional relevant links not included in the presentation:Tools to convert e.g. excel files into the enanomapper RDF format here http://ambit.sourceforge.net/enanomapper/templates/convertor.htmlCollection...

Systematic pan-cancer analysis of tumour purity

05 Dec 2016 | Publications | Contributor(s): Dvir Aran

The tumour microenvironment is the non-cancerous cells present in and around a tumour, including mainly immune cells, but also fibroblasts and cells that comprise supporting blood vessels. These non-cancerous components of the tumour may play an important role in cancer biology. They also have a...

ASTM update: minimun ontology proposal

01 Dec 2016 | Presentations | Contributor(s): Frederick C. Klaessig

Nano WG Meeting December 1, 2016. •  Review of interac+ons between ASTM and Nanoinforma+cs Roadmaps •  Status of ASTM ‘minimum ontology’ proposal •  Discussion of best means of iden+fying a “neutral, core, basic, minimum” ontology that is...

Regulatory Challenges and Opportunities for Digital Pathology

29 Nov 2016 | Presentations | Contributor(s): Nick Anderson

FDA has cleared or approved a number of digital pathology devices for different intended uses, such as digital read and image analysis of immunohistochemically stained tissue slides, classification and enumeration of peripheral blood cells, and initial screening of cervical cytology slides. ...

eNanoMapper Database, Search Tools and Templates

23 Nov 2016 | Presentations | Contributor(s): Nina Jeliazkova

Nano WG presentation, November 17, 2016

Emerging Issues Briefs

14 Nov 2016 | Publications

Each quarter, the New Hampshire Comprehensive Cancer Collaboration, in partnership with the Dartmouth-Hitchcock Norris Cotton Cancer Center, publishes an "Emerging Issues Brief." These briefs are intended to review a misunderstood, controversial, emerging, or otherwise "hot"...

Shared Decision Making for Cancer Screening rack card

14 Nov 2016 | Teaching Materials | Contributor(s): Jenna Schiffelbein, New Hampshire Comprehensive Cancer Collaboration

This patient-education resource was developed by the New Hampshire Comprehensive Cancer Collaboration's Shared Decision Making Task Force in 2016. The purpose of the rack card is to educate patients about shared decision making and to encourage them to talk with their health care...

Nano WG: Nanoinformatics Roadmap 2020 Update

03 Nov 2016 | Presentations | Contributor(s): Andrea Haas, Frederick C. Klaessig

Nano WG weekly meeting November 3, 2016.Update on the Nanoinformatics 2020 Roadmap Activities by Andrea Haas and Fred Klaessig. 

Taiwan's nanoMark system and related activities

26 Oct 2016 | Presentations | Contributor(s): Mike Yao

Nano WG Weekly Meeting October 20, 2016 Presentation by Dr. Mike Yao, Deputy manager, Center for Measurement Standards, Industrial Technology Research Institute (ITRI), Taiwan While the US and EU were struggled with the definition of "nano", the Taiwanese government in 2004,...

Instructional YouTube AltAnalyze Videos

13 Oct 2016 | Presentations | Contributor(s): Nathan Salomonis

Interactive tutorial for processing raw bulk and single-cell RNA-Seq (FASTQ) data in AltAnalyze:https://www.youtube.com/watch?v=Jylu-V7FmpY Interactive tutorials for analyzing pre-processed bulk and single-cell RNA-Seq data in...