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  1. Extending 3D Slicer to support ground truth pathology tissue segmentation data for integrated pathology/radiology image analysis competitions.

    06 Jan 2017 | Presentations | Contributor(s): Joel Haskin Saltz, Andrey Fedorov, Jayashree Kalpathy-Cramer

    ITCR PI Monthly Meeting January 6, 2017 Collaborative project goal: Improve support in 3D Slicer for pathology imaging, generate high quality, well curated “ground truth” annotations, integrate key aspects of the Stony Brook ITCR project (FeatureDB) into the MGH project and...

  2. eNanoMapper Ontology

    14 Dec 2016 | Presentations | Contributor(s): Linda Rieswijk

    Nano WG December 7, 2016 presentation by Linda Rieswijk (Maastricht University).Additional relevant links not included in the presentation:Tools to convert e.g. excel files into the enanomapper RDF format here http://ambit.sourceforge.net/enanomapper/templates/convertor.htmlCollection...

  3. Systematic pan-cancer analysis of tumour purity

    05 Dec 2016 | Publications | Contributor(s): Dvir Aran

    The tumour microenvironment is the non-cancerous cells present in and around a tumour, including mainly immune cells, but also fibroblasts and cells that comprise supporting blood vessels. These non-cancerous components of the tumour may play an important role in cancer biology. They also have a...

  4. ASTM update: minimun ontology proposal

    01 Dec 2016 | Presentations | Contributor(s): Frederick C. Klaessig

    Nano WG Meeting December 1, 2016. •  Review of interac+ons between ASTM and Nanoinforma+cs Roadmaps •  Status of ASTM ‘minimum ontology’ proposal •  Discussion of best means of iden+fying a “neutral, core, basic, minimum” ontology that is...

  5. Regulatory Challenges and Opportunities for Digital Pathology

    29 Nov 2016 | Presentations | Contributor(s): Nick Anderson

    FDA has cleared or approved a number of digital pathology devices for different intended uses, such as digital read and image analysis of immunohistochemically stained tissue slides, classification and enumeration of peripheral blood cells, and initial screening of cervical cytology slides. ...

  6. eNanoMapper Database, Search Tools and Templates

    23 Nov 2016 | Presentations | Contributor(s): Nina Jeliazkova

    Nano WG presentation, November 17, 2016

  7. Emerging Issues Briefs

    14 Nov 2016 | Publications

    Each quarter, the New Hampshire Comprehensive Cancer Collaboration, in partnership with the Dartmouth-Hitchcock Norris Cotton Cancer Center, publishes an "Emerging Issues Brief." These briefs are intended to review a misunderstood, controversial, emerging, or otherwise "hot"...

  8. Shared Decision Making for Cancer Screening rack card

    14 Nov 2016 | Teaching Materials | Contributor(s): Jenna Schiffelbein, New Hampshire Comprehensive Cancer Collaboration

    This patient-education resource was developed by the New Hampshire Comprehensive Cancer Collaboration's Shared Decision Making Task Force in 2016. The purpose of the rack card is to educate patients about shared decision making and to encourage them to talk with their health care...

  9. Nano WG: Nanoinformatics Roadmap 2020 Update

    03 Nov 2016 | Presentations | Contributor(s): Andrea Haas, Frederick C. Klaessig

    Nano WG weekly meeting November 3, 2016.Update on the Nanoinformatics 2020 Roadmap Activities by Andrea Haas and Fred Klaessig. 

  10. Taiwan's nanoMark system and related activities

    26 Oct 2016 | Presentations | Contributor(s): Mike Yao

    Nano WG Weekly Meeting October 20, 2016 Presentation by Dr. Mike Yao, Deputy manager, Center for Measurement Standards, Industrial Technology Research Institute (ITRI), Taiwan While the US and EU were struggled with the definition of "nano", the Taiwanese government in 2004,...

  11. Instructional YouTube AltAnalyze Videos

    13 Oct 2016 | Presentations | Contributor(s): Nathan Salomonis

    Interactive tutorial for processing raw bulk and single-cell RNA-Seq (FASTQ) data in AltAnalyze:https://www.youtube.com/watch?v=Jylu-V7FmpY Interactive tutorials for analyzing pre-processed bulk and single-cell RNA-Seq data in...

  12. Instructional YouTube AltAnalyze Videos

    13 Oct 2016 | Presentations | Contributor(s): Nathan Salomonis

    Using AltAnalyze to process bulk and single-cell RNA-Seq files with the Kallisto algorithm:https://www.youtube.com/watch?v=Jylu-V7FmpY Using AltAnalyze to process pre-computed bulk and single-cell gene expression...

  13. Active Learning: A Toolkit for Teachers

    11 Oct 2016 | Teaching Materials | Contributor(s): Jenna Schiffelbein

    This toolkit is intended to help K-12 teachers incorporate physical activity into their classrooms to promote healthy exercise behaviors with youth. It was developed in partnership between the Dartmouth-Hitchcock Norris Cotton Cancer Center, the State of Vermont, and the State of New Hampshire,...

  14. Human Disease Ontology

    21 Sep 2016 | External Applications | Contributor(s): Lynn Schriml

    The Disease Ontology has been developed as a standardized ontology for human disease, since 2003, with the purpose of providing the biomedical community with manual curated, consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related...

  15. Health Rocks Compliment for Upper Elementary and Middle School

    21 Sep 2016 | Teaching Materials | Contributor(s): John Patrick Brice Jr

    Written Compilation for Students in Rural Appalachian NC Middle and Elementary Schools regarding health and the environment with cancer topics integrated into curriculum *including substance abuse, nutrition, obesity, diabetes, and water safety education*

  16. NCIP Hub Account Creation Guide

    20 Sep 2016 | Presentations | Contributor(s): Joanthan Kurian

    This presentation walks you through the NCIP Hub account creation process step by step.

  17. Providing National Cyberinfrastructure to Biologists, esp. Genomicists

    02 Sep 2016 | Presentations | Contributor(s): Tom Doek, Mervi Heiskanen

    National Center for Genome Analysis Support (NCGAS) provides access to High Performance Computing resources for biologists. NCGAS also maintains a curated set of applications and Galaxy instances of their software, as well as provides bioinformatics expertise.

  18. caNanoLab Data Curation Tips

    23 Aug 2016 | Presentations | Contributor(s): Sharon Gaheen

    This presentation includes tips for investigators submitting data to caNanoLab. 

  19. US-EU Nanoinformatics Roadmap Update

    27 Jul 2016 | Presentations | Contributor(s): Frederick C. Klaessig

    US-EU Nanoinformatics Roadmap Update for the Nano WG on July 28, 2016

  20. Cancer Genomics, Open Science and PMI: FAIR at NCI

    21 Jul 2016 | Presentations | Contributor(s): Warren Kibbe

    Presentation to the NLM Informatics Fellows on July 8th, 2016 highlighting cancer community activities in data science, open science, data sharing, and cancer genomics.