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Fourth ISC Workshop on HPC Applications in Precision Medicine – Virtual (Rescheduled from 2020)

July 2, 2021 | Virtual

Conference Website: http://isc-hpc.com

Workshop website: http://ncihub.org/groups/hapm21

Registration required for workshop: https://ncihub.org/groups/hapm21/registration_information

Program, including abstracts and speaker bios, in PDF

Preliminary Workshop Program and Schedule

(8 a.m. – 12 noon, All times listed are Eastern)

 

8:00 a.m.–8:05 a.m.

Welcome — Fourth ISC Workshop on HPC Applications in Precision Medicine (HAPM21)

Eric Stahlberg, Frederick National Laboratory for Cancer Research

8:05 a.m.–8:45 a.m.

Keynote

Collective effects in cancer invasion and progression: Insights from mathematical models and analysis

Andreas Deutsch, Technische Universität Dresden

8:45 a.m.–9:05 a.m.

Simulating evolution in heterogeneous tumors and the influence of the microenvironment

Jakob Rosenbauer, Research Center Jülich; Marco Berghoff, Karlsruhe Institute of Technology; Alexander Schug, Research Center Jülich

Presenter: Jakob Rosenbauer

9:05 a.m.–9:25 a.m.

A digital twin dyad with deep Q-learning in head and neck cancer treatment

Elisa Tardini, The University of Illinois at Chicago; Xinhua Zhang, The University of Illinois at Chicago; Guadalupe Canahuate, University of Iowa; Andrew Wentzel, The University of Illinois at Chicago; Abdallah S. R. Mohamed, The University of Texas MD Anderson Cancer Center; Lisanne Van Dijk, The University of Texas MD Anderson Cancer Center; Clifton D. Fuller, The University of Texas MD Anderson Cancer Center; G. Elisabeta Marai, The University of Illinois at Chicago

Presenter: Elisa Tardini

 

9:25 a.m.–9:45 a.m.

Leveraging a hybrid and multiscale model to assist androgen deprivation therapy in recurrent prostate cancer patients

Mengdi Tao, Alokendra Ghosh and Ravi Radhakrishnan, University of Pennsylvania

Presenter: Mengdi Tao

9:45 a.m.–10:05 a.m.

Quantifying vulnerability of privacy attacks on MT-CNN models for information extraction from cancer pathology reports

Hong-Jun Yoon, Hilda B. Klasky, Christopher Stanley and J. Blair Christian, Oak Ridge National Laboratory; Eric B. Durbin, University of Kentucky; Xiao-Cheng Wu, Louisiana State University Health Sciences Center School of Public Health; Antoinette Stroup, Rutgers Cancer Institute of New Jersey; Jennifer Doherty, University of Utah; Linda Coyle, Information Management Services, Inc.; Lynne Penberthy, National Cancer Institute; Georgia Tourassi, Oak Ridge National Laboratory

Presenter: Hong-Jun Yoon

10:05 a.m.–10:20 a.m.

Break

10:20 a.m.–10:55 a.m.

Panel: Digital Twins for Cancer Care

Moderator:

Eric Stahlberg, Frederick National Laboratory for Cancer Research

Panelists:

Anastasia Christianson, Johnson & Johnson

Tina Hernandez-Boussard, Stanford University

Emily Greenspan, National Cancer Institute

Marieke Kuijjer, Centre for Molecular Medicine Norway

10:55 a.m.–11:15 a.m.

Medical cybernetics for continuous risk assessment and value of information analysis of treatments

Zsolt Ori, Ori Diagnostic Instruments LLC

11:15 a.m.–11:35 a.m.

Security standards and ease of use of HPC systems by clinical researchers Matthew R. Link, Anurag Shankar, David Hancock, Robert Henschel, Scott Michael and Craig A. Stewart, Indiana University

Presenter: Craig A. Stewart and Anurag Shankar

11:35 a.m.–11:55 a.m.

Longitudinal deep learning study on MIMIC-III dataset

Xin Dai, Ji Hwan Park, Nicholas D’imperio, Shinjae Yoo, Brookhaven National Laboratory

Presenter: Xin Dai

11:55 a.m.–12:00 p.m.

HAPM21 Wrap-Up

Keynote

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Andreas Deutsch, Dresden University of Technology

 

Andreas Deutsch is head of the department of Innovative Methods of Computing at the Centre for Information Services and High Performance Computing (Dresden University of Technology). His research is focused on mathematical biology, especially cellular automata and agent-based modelling, cancer invasion and collective phenomena in the life sciences.

 

 

 

 

 

Organizing Committee

Marco Berghoff – Karlsruhe Institute of Technology

Stephen Litster – Amazon Web Services

Jan Nygard – Cancer Registry of Norway

Eric Stahlberg – Frederick National Laboratory for Cancer Research

Thomas Steinke – Zuse Institute Berlin

Lynn Borkon – Frederick National Laboratory for Cancer Research

Petrina Hollingsworth – Frederick National Laboratory for Cancer Research

Created by Petrina Hollingsworth Last Modified Fri July 2, 2021 8:06 am by Petrina Hollingsworth