Fourth ISC Workshop on HPC Applications in Precision Medicine – Virtual (Rescheduled from 2020)
July 2, 2021 | Virtual
Conference Website: http://isc-hpc.com
Workshop website: http://ncihub.org/groups/hapm21
Registration required for workshop: https://ncihub.org/groups/hapm21/registration_information
Program, including abstracts and speaker bios, in PDF
Preliminary Workshop Program and Schedule
(8 a.m. – 12 noon, All times listed are Eastern)
8:00 a.m.–8:05 a.m. |
Welcome — Fourth ISC Workshop on HPC Applications in Precision Medicine (HAPM21) Eric Stahlberg, Frederick National Laboratory for Cancer Research |
8:05 a.m.–8:45 a.m. |
Keynote Collective effects in cancer invasion and progression: Insights from mathematical models and analysis Andreas Deutsch, Technische Universität Dresden |
8:45 a.m.–9:05 a.m. |
Simulating evolution in heterogeneous tumors and the influence of the microenvironment Jakob Rosenbauer, Research Center Jülich; Marco Berghoff, Karlsruhe Institute of Technology; Alexander Schug, Research Center Jülich Presenter: Jakob Rosenbauer |
9:05 a.m.–9:25 a.m. |
A digital twin dyad with deep Q-learning in head and neck cancer treatment Elisa Tardini, The University of Illinois at Chicago; Xinhua Zhang, The University of Illinois at Chicago; Guadalupe Canahuate, University of Iowa; Andrew Wentzel, The University of Illinois at Chicago; Abdallah S. R. Mohamed, The University of Texas MD Anderson Cancer Center; Lisanne Van Dijk, The University of Texas MD Anderson Cancer Center; Clifton D. Fuller, The University of Texas MD Anderson Cancer Center; G. Elisabeta Marai, The University of Illinois at Chicago Presenter: Elisa Tardini |
9:25 a.m.–9:45 a.m. |
Leveraging a hybrid and multiscale model to assist androgen deprivation therapy in recurrent prostate cancer patients Mengdi Tao, Alokendra Ghosh and Ravi Radhakrishnan, University of Pennsylvania Presenter: Mengdi Tao |
9:45 a.m.–10:05 a.m. |
Quantifying vulnerability of privacy attacks on MT-CNN models for information extraction from cancer pathology reports Hong-Jun Yoon, Hilda B. Klasky, Christopher Stanley and J. Blair Christian, Oak Ridge National Laboratory; Eric B. Durbin, University of Kentucky; Xiao-Cheng Wu, Louisiana State University Health Sciences Center School of Public Health; Antoinette Stroup, Rutgers Cancer Institute of New Jersey; Jennifer Doherty, University of Utah; Linda Coyle, Information Management Services, Inc.; Lynne Penberthy, National Cancer Institute; Georgia Tourassi, Oak Ridge National Laboratory Presenter: Hong-Jun Yoon |
10:05 a.m.–10:20 a.m. |
Break |
10:20 a.m.–10:55 a.m. |
Panel: Digital Twins for Cancer Care Moderator: Eric Stahlberg, Frederick National Laboratory for Cancer Research Panelists: Anastasia Christianson, Johnson & Johnson Tina Hernandez-Boussard, Stanford University Emily Greenspan, National Cancer Institute Marieke Kuijjer, Centre for Molecular Medicine Norway |
10:55 a.m.–11:15 a.m. |
Medical cybernetics for continuous risk assessment and value of information analysis of treatments Zsolt Ori, Ori Diagnostic Instruments LLC |
11:15 a.m.–11:35 a.m. |
Security standards and ease of use of HPC systems by clinical researchers Matthew R. Link, Anurag Shankar, David Hancock, Robert Henschel, Scott Michael and Craig A. Stewart, Indiana University Presenter: Craig A. Stewart and Anurag Shankar |
11:35 a.m.–11:55 a.m. |
Longitudinal deep learning study on MIMIC-III dataset Xin Dai, Ji Hwan Park, Nicholas D’imperio, Shinjae Yoo, Brookhaven National Laboratory Presenter: Xin Dai |
11:55 a.m.–12:00 p.m. |
HAPM21 Wrap-Up |
Keynote
Andreas Deutsch, Dresden University of Technology
Andreas Deutsch is head of the department of Innovative Methods of Computing at the Centre for Information Services and High Performance Computing (Dresden University of Technology). His research is focused on mathematical biology, especially cellular automata and agent-based modelling, cancer invasion and collective phenomena in the life sciences.
Organizing Committee
Marco Berghoff – Karlsruhe Institute of Technology
Stephen Litster – Amazon Web Services
Jan Nygard – Cancer Registry of Norway
Eric Stahlberg – Frederick National Laboratory for Cancer Research
Thomas Steinke – Zuse Institute Berlin
Lynn Borkon – Frederick National Laboratory for Cancer Research
Petrina Hollingsworth – Frederick National Laboratory for Cancer Research