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  • Created 13 Jan 2017

eeDAP studies

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Wiki

HTT Updates

by Brandon D. Gallas

Version 18
by (unknown)
Version 19
by (unknown)

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1 [MainPage Wiki Main Page]
2
3 =Current Update=
4
5 ====[HTTupdateCurrent Link to Current HTT Project Updates]====
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7 +
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= 31 May 2022: HTT Project Update=
9 +
====[HTTupdate20220531 Link to the full update, including]====
10 +
11 +
* FDA-PIcc Discussion Series: Can AI Grand-Challenges inform Regulatory Science in Anatomic Pathology
12 +
* AACR Poster Presentation: “Tools for collecting pathologist annotations and understanding interobserver variability”
13 +
* Published Manuscript: “Three-Way Mixed Effect ANOVA to Estimate MRMC Limits of Agreement”
14 +
* Pathology Informatics Presentation: “Development of Pathologist Training Materials using Consensus Driven Annotations of sTIL Assessment in Breast Cancer”
15 +
* Published Manuscript, Garcia V, et. al,: “Development of Training Materials for Pathologists to Provide Machine Learning Validation Data of Tumor-Infiltrating Lymphocytes in Breast Cancer”
16 ----
17 = 26 January 2022: HTT Project Update=
18 ====[HTTupdate20220126 Link to the full update, including]====
19
20 * 21 October 2021: PIcc featured at FDA/CDRH All Hands
21 * November 2021: Published Manuscript, Dudgeon, Sarah N. et. al. “A pathologist-annotated dataset for validating artificial intelligence: a project description and pilot study.” J. Pathol. Inform. 1.45 (2021).
22 *Recording Available: Tour of HTTdev Repo
23 * Accepted Letter to the Editor of Nature Machine Intelligence. Gallas BD, et. al, “Research, Resources, and Collaboration: FDA Fosters Innovative Approaches”
24
25 ----
26 =30 September 2021: HTT Project Update=
27 ====[HTTupdate20210930 Link to the full update, including] ====
28 * Execution of two Research Collaboration Agreements (RCAs)
29 * Shipment of eeDAP to Yale University for microscope-mode data collection
30 * Public Release of HTT Github Repository
31
32 =23 October 2020: HTT Project Update=
33 ====[HTTupdate20201023 Link to the full update, including] ====
34 * Call for Action and Request for Volunteers
35 * Submission of HTT Pilot Study Methods manuscript to the Journal of Pathology Informatics
36
37 = 9 December 2019: HTT Project Update =
38 ====[HTTupdate20191209 Link to the full update, including] ====
39 * HTT Project Update
40 * MDDT Submission
41 * The Alliance for Digital pathology
42
43 = 2 April 2019: HTT Project Update =
44 ====[HTTupdate20190402 Link to the full update, including] ====
45 * HTT Project Update
46 * HTT Project Call for Collaboration
47 * Quick info about FDA submissions for medical imaging algorithms
48
49 = 12 February 2019: Misc. =
50 ====[HTTupdate20190212 Link to the full update, including] ====
51 * Request for 3D WSI image needing segmentation
52 * New manuscript by Brandon highlighting multiple-reader, multiple-case study design and analysis
53 * Short update on HTT project
54
55 = 01 December 2018: Project Planning and Infrastructure =
56 ====[HTTupdate20181201 Link to the full update, including] ====
57 * Overview of HTT project: [https://nciphub.org/groups/eedapstudies/wiki/HighthroughputTruthingYear2/File:20181130-HTToverviewToCollabs.pdf Slides presented to collaborators.]
58 * Overview of HTT project will be presented to www.tilsinbreastcancer.org Dec. 6, 7am.
59 * Infrastructure overview: !QuIP/caMicroscope/TCIA, Ashish Sharma Dec. 10, 11am.
60 * '''You are invited. !WebEx info included.'''
61
62 = 06 November 2018: Project Planning =
63 ==== [HTTupdate20181106 Link to the full update, including] ====
64 * Scheduling meetings for to-do list
65 * USCAP data-collection event
66 * Use-case dev. & data-collection protocol
67 * Infrastructure
68 * Project plan
69
70 = 24 October 2018: FDA high-throughput truthing project: Welcome =
71 ==== [HTTupdate20181024 Link to the full update, including] ====
72 * Welcome to the high-throughput truthing (HTT) project
73 * Links to project proposal and collaborators
74 * Request to join https://nciphub.org/groups/eedapstudies
75
76 = 18 September 2018: Presentation at ECP 2018 =
77 ==== [eeDAPupdate20180918 Link to the full update including] ====
78 * Slides for, "Evaluating Computational Pathology at the US FDA and Related Research," by Brandon D. Gallas
79 * Presented at the Computational Pathology Workshop at the European Congress of Pathology (ECP)
80
81 = 13 July 2018: Mid-year project report on High-Throughput Truthing project =
82 ==== [eeDAPupdate20180713 Link to the full update] ====
83
84 = 23 May 2018: Presentation at Pathology Informatics 2018 =
85 ==== [Presentation:AReaderStudyona14headMicroscope Link to the full update, including] ====
86 * Slides for, "A Reader Study on a 14-head Microscope," by Brandon D. Gallas
87 * Link to descriptions of studies executed at Memorial Sloan Kettering
88
89 = 23 April 2018: Augmented reality in the microscope eyepiece =
90 ==== [eeDAPupdate20180423 Link to the full update] ====
91
92 = 16 January 2018: Update on eeDAP studies and installations =
93 ==== [20180116TconAgendaMinutes Link to the full update] ====
94 * Recent studies at Memorial Sloan Kettering
95 * eeDAP installation at CSHL
96 * Registration accuracy studies and eeDAP MDDT
97 * Review High-Throughput Truthing (HTT) project proposal
98 * Position available to support HTT project
99
100 = 12 November 2017: High-Throughput Truthing Project Proposal =
101 ==== [eeDAPupdate20171121 Link to the full update ] ====
102 * Revised “Context of Use” and strategy for eeDAP MDDT
103 * Registration accuracy studies
104 * MTA to loan an eeDAP system to Memorial Sloan Kettering
105 * MSK reader study on 14-head microscope
106 * eeDAP installation at CSHL
107 * FDA Commissioner Scott Gottlieb visited Brandon Gallas' digital pathology lab
108
109 = 18 July 2017: Update from Memorial Sloan Kettering using eeDAP =
110 ==== [20170718TconAgendaMinutes Link to the full update] ====
111
112 = 12 June 2017: Registration accuracy and update from Memorial Sloan Kettering using eeDAP =
113 ==== [20170612TconAgendaMinutes Link to the full update] ====
114 * Registration accuracy studies
115 * Mitotic figure study design
116
117 = 03 May 2017: PI Summit 2017 and MDDT proposal =
118 ==== [20170503TconAgendaMinutes Link to the full update] ====
119 * Reminder about PI Summit, Pathology Informatics Summit 2017
120 * Preliminary response from FDA on the eeDAP MDDT proposal explaining delay
121 * FDA accepts eeDAP into MDDT incubator phase
122 * Open submission or Mock submission
123 * Project members have run eeDAP
124 * Registration accuracy plans
125 * Funding for WSI WG meeting to happen at Pathology Informatics Summit 2017
126
127 = 18 April 2017: Philips de Novo and eeDAP MDDT =
128 ==== [20170418TconAgendaMinutes Link to the full agenda] ====
129 * Can eeDAP MDDT context of use be about technical performance only?
130
131 = 03 April 2017: Introductions to the eeDAP studies objectives =
132 ==== [20170403TconAgendaMinutes Link to full agenda] ====
133 * Collect reference data for machine learning
134 * Link technical performance to pathologist performance
135 * Planning Pathology Informatics Summit 2017
136 * Start detailing study plans and protocols
137 * Encourage group to test drive eeDAP