Session Chairs

Eric Stahlberg, Frederick National Laboratory for Cancer Research

Thomas J. Barr, Nationwide Children's Hospital

Patricia Kovatch, Icahn School of Medicine at Mount Sinai

Sunita Chandrasekaran, University of Delaware                              

 

9:00am–9:10am

Introduction – Fourth Computational Approaches for Cancer Workshop (CAFCW18)

9:10am–10:00am

Morning Keynote – Computational Approaches in Clinical Applications

Presenter

Ketan Paranjape

10:00am–10:30am

Morning Break

10:30am–11:00am

Developing a Reproducible WDL-Based Workflow for RNASeq Data Using Modular, Software Engineering-Based Approaches

Author/Presenters

Scott Cukras

Fredrik Pettersson

Yonghong Zhang

Ling Cen

Jamie Teer

Steven Eschrich

11:00am–11:15am

Safety, Reproducibility, Performance: Accelerating Cancer Drug Discovery with Cloud, ML, and HPC Technologies

Author/Presenter

Amanda J. Minnich

11:15am–11:45am

The Gen3 Approach to Portability and Repeatability for Cancer Genomics Projects Author/Presenters

Zac Flamig

Yajing Tang

Robert L. Grossman

11:45am–12:00pm

Scalable Deep Ensemble Learning for Cancer Drug Discovery

Author/Presenters

Sam Ade Jacobs

Tim Moon

Brian C. Van Essen

12:00pm–12:30pm

Panel Discussion: Reproducibility and Accessibility–Challenges and Opportunities

12:30pm–2:00pm

Lunch Break

2:00pm–3:00pm

Afternoon Keynote – Genomic Profiling of Normal, Premalignant, and Heterogeneous Tissues in Cancer Patients

Presenter

Paul Scheet

3:00pm–3:30pm

Workshop Afternoon Break

3:30pm–4:00pm

HPC-Based Hyperparameter Search of MT-CNN for Information Extraction from Cancer Pathology Reports

Author/Presenters

Hong-Jun Yoon

Mohammed Alawad

Blair Christian

Jacob Hinkle

Arvind Ramanathan

Georgia Tourassi

4:00pm–4:15pm

Toward a Computational Simulation of Circulating Tumor Cell Transport in Vascular Geometries

Author/Presenters

John Gounley

Erik W. Draeger

Amanda Randles

4:15pm–4:45pm

Hummingbird: Efficient Performance Prediction for Executing Genomics Applications in the Cloud

Author/Presenters

Utsab Ray

Frank Mueller

Amir Bahmani

Vandhana Krishnan

4:45pm–5:00pm

Toward a Pre-Cancer Image Atlas through Crowdsourcing and Machine Learning

Author/Presenters

Ashish Mahabal

David Liu

Luca Cinquini

Daniel Crichton

Heather Kincaid

Sean Kelly

Kristen Anton

Maureen Colbert

Christopher Amos

Matthew Schabath

Christos Patriotis

Sudhir Srivastava

5:00pm–5:30pm

Extending Frontiers for Computing in Cancer – Special Session

 

Created by Petrina Hollingsworth Last Modified Wed August 12, 2020 1:24 pm by Petrina Hollingsworth